Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC004448.1-201ENST00000458332 883 ntBASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.65■■□□□ 1.38
PCDHA3Q9Y5H8 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA3Q9Y5H8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.64■■□□□ 1.38
PCDHA3Q9Y5H8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA3Q9Y5H8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.64■■□□□ 1.37
PCDHA3Q9Y5H8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
PCDHA3Q9Y5H8 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA3Q9Y5H8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
PCDHA3Q9Y5H8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 AC079630.1-202ENST00000618127 1840 ntBASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA3Q9Y5H8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 MIR4508-201ENST00000584178 70 ntBASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 CLDN5-201ENST00000403084 2357 ntBASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA3Q9Y5H8 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.58■■□□□ 1.37
PCDHA3Q9Y5H8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA3Q9Y5H8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA3Q9Y5H8 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA3Q9Y5H8 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.58■■□□□ 1.36
PCDHA3Q9Y5H8 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.58■■□□□ 1.36
PCDHA3Q9Y5H8 EP400NL-214ENST00000641289 2402 ntBASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDHA3Q9Y5H8 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA3Q9Y5H8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDHA3Q9Y5H8 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA3Q9Y5H8 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA3Q9Y5H8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDHA3Q9Y5H8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDHA3Q9Y5H8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDHA3Q9Y5H8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms