Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 AC131274.2-201ENST00000580697 1507 ntBASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA9Q9Y5H5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 AL031848.2-201ENST00000607670 837 ntBASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCDHA9Q9Y5H5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 C1orf229-201ENST00000623686 2258 ntBASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA9Q9Y5H5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHA9Q9Y5H5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA9Q9Y5H5 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA9Q9Y5H5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
PCDHA9Q9Y5H5 LINC00565-201ENST00000562710 2331 ntBASIC21.69■■□□□ 1.06
PCDHA9Q9Y5H5 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 RARRES2P1-201ENST00000474487 481 ntBASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 AC137630.3-201ENST00000607245 391 ntBASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA9Q9Y5H5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA9Q9Y5H5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA9Q9Y5H5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.65■■□□□ 1.06
PCDHA9Q9Y5H5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDHA9Q9Y5H5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms