Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
PCDHB3Q9Y5E6 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.02■■□□□ 1.12
PCDHB3Q9Y5E6 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
PCDHB3Q9Y5E6 HLA-L-211ENST00000482052 1765 ntBASIC22.02■■□□□ 1.11
PCDHB3Q9Y5E6 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
PCDHB3Q9Y5E6 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB3Q9Y5E6 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 AC096631.2-201ENST00000436136 790 ntBASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 AC004448.1-201ENST00000458332 883 ntBASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22■■□□□ 1.11
PCDHB3Q9Y5E6 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.99■■□□□ 1.11
PCDHB3Q9Y5E6 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHB3Q9Y5E6 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHB3Q9Y5E6 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHB3Q9Y5E6 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 AC110285.6-201ENST00000617652 491 ntBASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHB3Q9Y5E6 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 MIR4466-201ENST00000606121 54 ntBASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PCDHB3Q9Y5E6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 AL512631.2-201ENST00000604634 923 ntBASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 AC005837.3-201ENST00000612163 286 ntBASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHB3Q9Y5E6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.95■■□□□ 1.1
PCDHB3Q9Y5E6 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms