Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 AL161729.1-201ENST00000604104 1402 ntBASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM4Q9Y4Z0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 EP400NL-214ENST00000641289 2402 ntBASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
LSM4Q9Y4Z0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
LSM4Q9Y4Z0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
LSM4Q9Y4Z0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LSM4Q9Y4Z0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
LSM4Q9Y4Z0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LSM4Q9Y4Z0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 C1orf229-201ENST00000623686 2258 ntBASIC18.01■□□□□ 0.47
LSM4Q9Y4Z0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LSM4Q9Y4Z0 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LSM4Q9Y4Z0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 AC090877.2-201ENST00000558441 1738 ntBASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 LINC00565-201ENST00000562710 2331 ntBASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LSM4Q9Y4Z0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LSM4Q9Y4Z0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LSM4Q9Y4Z0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms