Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
CUEDC1Q9NWM3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
CUEDC1Q9NWM3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CUEDC1Q9NWM3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
CUEDC1Q9NWM3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 AL117332.1-201ENST00000622628 974 ntBASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CUEDC1Q9NWM3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.79■■□□□ 1.08
CUEDC1Q9NWM3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CUEDC1Q9NWM3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.77■■□□□ 1.08
CUEDC1Q9NWM3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CUEDC1Q9NWM3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
CUEDC1Q9NWM3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 MIR3621-201ENST00000580529 85 ntBASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CUEDC1Q9NWM3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CUEDC1Q9NWM3 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.74■■□□□ 1.07
CUEDC1Q9NWM3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CUEDC1Q9NWM3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.74■■□□□ 1.07
CUEDC1Q9NWM3 AL356740.2-201ENST00000601559 647 ntBASIC21.74■■□□□ 1.07
CUEDC1Q9NWM3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms