Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TM9SF3Q9HD45 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 AC099791.1-201ENST00000416440 715 ntBASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 AC097381.1-201ENST00000429019 1296 ntBASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 AC006455.2-201ENST00000429931 906 ntBASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 AC136469.2-201ENST00000623944 1028 ntBASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TM9SF3Q9HD45 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TM9SF3Q9HD45 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.54■■□□□ 1.2
TM9SF3Q9HD45 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 AC087623.3-201ENST00000607047 1098 ntBASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 AC022211.4-201ENST00000625094 2161 ntBASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TM9SF3Q9HD45 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 IRS3P-201ENST00000223076 1006 ntBASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 AC009086.3-201ENST00000623486 1008 ntBASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TM9SF3Q9HD45 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 AC138932.3-201ENST00000567634 1902 ntBASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 MIR3181-201ENST00000578512 73 ntBASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 AL139125.2-201ENST00000623134 1869 ntBASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
TM9SF3Q9HD45 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TM9SF3Q9HD45 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TM9SF3Q9HD45 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms