Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H2Q9HBD1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 AC141586.4-201ENST00000624558 1573 ntBASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RC3H2Q9HBD1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 ALDH1A3-203ENST00000557963 1670 ntBASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 IGHV3-19-201ENST00000521488 291 ntBASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.37■■□□□ 1.49
RC3H2Q9HBD1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 AC123595.1-201ENST00000440769 1046 ntBASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 AL358852.1-201ENST00000623174 1268 ntBASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.36■■□□□ 1.49
RC3H2Q9HBD1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 AL137784.2-201ENST00000607332 1000 ntBASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
RC3H2Q9HBD1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 AC091060.1-201ENST00000623524 1766 ntBASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
RC3H2Q9HBD1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 MIR572-201ENST00000384983 95 ntBASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 AC145676.1-201ENST00000514988 2004 ntBASIC24.33■■□□□ 1.49
RC3H2Q9HBD1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.32■■□□□ 1.48
RC3H2Q9HBD1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 AC012414.1-201ENST00000556676 535 ntBASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RC3H2Q9HBD1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RC3H2Q9HBD1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RC3H2Q9HBD1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RC3H2Q9HBD1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
RC3H2Q9HBD1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms