Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-4Q9H2Z4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-4Q9H2Z4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX2-4Q9H2Z4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-4Q9H2Z4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.34■■□□□ 1.49
NKX2-4Q9H2Z4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-4Q9H2Z4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
NKX2-4Q9H2Z4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 AC016769.1-201ENST00000409132 1010 ntBASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 TMEM191A-211ENST00000637163 1067 ntBASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-4Q9H2Z4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 AL355802.2-201ENST00000402069 882 ntBASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 AC137761.2-201ENST00000561729 223 ntBASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 AC145350.3-201ENST00000569033 163 ntBASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NKX2-4Q9H2Z4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 KRT18P61-201ENST00000585825 1298 ntBASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
NKX2-4Q9H2Z4 AC141586.4-201ENST00000624558 1573 ntBASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 AC010501.1-201ENST00000606270 1962 ntBASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NKX2-4Q9H2Z4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 AC026185.1-201ENST00000445748 174 ntBASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 AC142086.6-201ENST00000621154 1765 ntBASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NKX2-4Q9H2Z4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 AC010525.1-201ENST00000585559 441 ntBASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NKX2-4Q9H2Z4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 AP005435.1-201ENST00000529293 1178 ntBASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
NKX2-4Q9H2Z4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 AL109923.1-201ENST00000618799 583 ntBASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NKX2-4Q9H2Z4 AC091060.1-201ENST00000623524 1766 ntBASIC24.24■■□□□ 1.47
NKX2-4Q9H2Z4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
NKX2-4Q9H2Z4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
NKX2-4Q9H2Z4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms