Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C9orf40Q8IXQ3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 C17orf82-201ENST00000623772 1530 ntBASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.92■□□□□ 0.94
C9orf40Q8IXQ3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.91■□□□□ 0.94
C9orf40Q8IXQ3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 SRD5A1P1-201ENST00000442297 786 ntBASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
C9orf40Q8IXQ3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
C9orf40Q8IXQ3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
C9orf40Q8IXQ3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
C9orf40Q8IXQ3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C9orf40Q8IXQ3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.88■□□□□ 0.93
C9orf40Q8IXQ3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
C9orf40Q8IXQ3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
C9orf40Q8IXQ3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C9orf40Q8IXQ3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C9orf40Q8IXQ3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C9orf40Q8IXQ3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
C9orf40Q8IXQ3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C9orf40Q8IXQ3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
C9orf40Q8IXQ3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
C9orf40Q8IXQ3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms