Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC14.22□□□□□ -0.13
LINC00643Q86TS7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00643Q86TS7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC14.21□□□□□ -0.14
LINC00643Q86TS7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 LINC01521-201ENST00000504184 1943 ntBASIC14.2□□□□□ -0.14
LINC00643Q86TS7 FBXW4P1-201ENST00000426721 2239 ntBASIC14.2□□□□□ -0.14
LINC00643Q86TS7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00643Q86TS7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00643Q86TS7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 AC026310.3-201ENST00000625186 2373 ntBASIC14.18□□□□□ -0.14
LINC00643Q86TS7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 SLC6A10P-202ENST00000431994 2058 ntBASIC14.18□□□□□ -0.14
LINC00643Q86TS7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC00643Q86TS7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 WASH5P-204ENST00000632292 975 ntBASIC14.17□□□□□ -0.14
LINC00643Q86TS7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms