Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 pRNA.6-201ENST00000610482 90 ntBASIC15.91■□□□□ 0.14
CSMD3Q7Z407 pRNA.5-201ENST00000612139 90 ntBASIC15.91■□□□□ 0.14
CSMD3Q7Z407 pRNA.11-201ENST00000618423 90 ntBASIC15.91■□□□□ 0.14
CSMD3Q7Z407 pRNA.13-201ENST00000619112 90 ntBASIC15.91■□□□□ 0.14
CSMD3Q7Z407 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
CSMD3Q7Z407 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 AC066615.1-201ENST00000640911 628 ntBASIC15.9■□□□□ 0.14
CSMD3Q7Z407 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 AC241377.3-202ENST00000626088 1088 ntBASIC15.9■□□□□ 0.14
CSMD3Q7Z407 AC241585.3-202ENST00000628937 1088 ntBASIC15.9■□□□□ 0.14
CSMD3Q7Z407 AC245100.8-202ENST00000629247 1058 ntBASIC15.9■□□□□ 0.14
CSMD3Q7Z407 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD3Q7Z407 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC15.89■□□□□ 0.13
CSMD3Q7Z407 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC15.89■□□□□ 0.13
CSMD3Q7Z407 AC092171.4-201ENST00000609130 632 ntBASIC15.89■□□□□ 0.13
CSMD3Q7Z407 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 MAP2K4P1-201ENST00000438453 1195 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 GUSBP6-202ENST00000438529 1198 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 NTF6G-201ENST00000591094 616 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 MIR6084-201ENST00000622012 110 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 AC073111.5-205ENST00000641717 521 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 GXYLT1P2-201ENST00000433312 1230 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 AC126544.1-201ENST00000580842 1059 ntBASIC15.88■□□□□ 0.13
CSMD3Q7Z407 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CSMD3Q7Z407 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 NT5C3AP1-201ENST00000394500 1012 ntBASIC15.87■□□□□ 0.13
CSMD3Q7Z407 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSMD3Q7Z407 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSMD3Q7Z407 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSMD3Q7Z407 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC15.85■□□□□ 0.13
CSMD3Q7Z407 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC15.85■□□□□ 0.13
CSMD3Q7Z407 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.85■□□□□ 0.13
CSMD3Q7Z407 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms