Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
SHFQ7M4L6 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHFQ7M4L6 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHFQ7M4L6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SHFQ7M4L6 AC129492.7-201ENST00000622992 756 ntBASIC20.33■□□□□ 0.85
SHFQ7M4L6 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHFQ7M4L6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SHFQ7M4L6 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.33■□□□□ 0.84
SHFQ7M4L6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHFQ7M4L6 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHFQ7M4L6 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHFQ7M4L6 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHFQ7M4L6 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHFQ7M4L6 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
SHFQ7M4L6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 LINC00526-201ENST00000581067 1875 ntBASIC20.31■□□□□ 0.84
SHFQ7M4L6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHFQ7M4L6 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.31■□□□□ 0.84
SHFQ7M4L6 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHFQ7M4L6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHFQ7M4L6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.3■□□□□ 0.84
SHFQ7M4L6 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SHFQ7M4L6 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHFQ7M4L6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.28■□□□□ 0.84
SHFQ7M4L6 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.28■□□□□ 0.84
SHFQ7M4L6 AC011551.1-201ENST00000614101 683 ntBASIC20.28■□□□□ 0.84
SHFQ7M4L6 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHFQ7M4L6 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHFQ7M4L6 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHFQ7M4L6 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHFQ7M4L6 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHFQ7M4L6 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SHFQ7M4L6 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHFQ7M4L6 AL022069.1-201ENST00000568025 1636 ntBASIC20.27■□□□□ 0.83
SHFQ7M4L6 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
SHFQ7M4L6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHFQ7M4L6 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.26■□□□□ 0.83
SHFQ7M4L6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHFQ7M4L6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 KRT18P60-201ENST00000312876 1297 ntBASIC20.26■□□□□ 0.83
SHFQ7M4L6 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 AC022616.5-201ENST00000518796 181 ntBASIC20.26■□□□□ 0.83
SHFQ7M4L6 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms