Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF404Q494X3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
ZNF404Q494X3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF404Q494X3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 AC092068.2-201ENST00000590491 1708 ntBASIC20.36■□□□□ 0.85
ZNF404Q494X3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
ZNF404Q494X3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ZNF404Q494X3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF404Q494X3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
ZNF404Q494X3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
ZNF404Q494X3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF404Q494X3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF404Q494X3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF404Q494X3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF404Q494X3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
ZNF404Q494X3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF404Q494X3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF404Q494X3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.34■□□□□ 0.85
ZNF404Q494X3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF404Q494X3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF404Q494X3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ZNF404Q494X3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.34■□□□□ 0.85
ZNF404Q494X3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF404Q494X3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF404Q494X3 AC012354.3-201ENST00000623734 483 ntBASIC20.34■□□□□ 0.85
ZNF404Q494X3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF404Q494X3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF404Q494X3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF404Q494X3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF404Q494X3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF404Q494X3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
ZNF404Q494X3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF404Q494X3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.33■□□□□ 0.85
ZNF404Q494X3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
ZNF404Q494X3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.33■□□□□ 0.85
ZNF404Q494X3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF404Q494X3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF404Q494X3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF404Q494X3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF404Q494X3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ZNF404Q494X3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ZNF404Q494X3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ZNF404Q494X3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
ZNF404Q494X3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF404Q494X3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF404Q494X3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF404Q494X3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF404Q494X3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF404Q494X3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF404Q494X3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
ZNF404Q494X3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF404Q494X3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF404Q494X3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF404Q494X3 AC129492.7-201ENST00000622992 756 ntBASIC20.3■□□□□ 0.84
ZNF404Q494X3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF404Q494X3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF404Q494X3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF404Q494X3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF404Q494X3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ZNF404Q494X3 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ZNF404Q494X3 AC242852.2-201ENST00000615738 1807 ntBASIC20.29■□□□□ 0.84
ZNF404Q494X3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF404Q494X3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms