Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV27A0A087WT01 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV27A0A087WT01 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 C1orf229-201ENST00000623686 2258 ntBASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV27A0A087WT01 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 MIR4508-201ENST00000584178 70 ntBASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 KRT8P33-201ENST00000508125 1423 ntBASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAV27A0A087WT01 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
TRAV27A0A087WT01 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 AC233723.2-201ENST00000623798 2106 ntBASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
TRAV27A0A087WT01 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 AC004448.1-201ENST00000458332 883 ntBASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 AC103834.1-201ENST00000520383 144 ntBASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV27A0A087WT01 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV27A0A087WT01 AC079834.2-201ENST00000609776 1949 ntBASIC20.39■□□□□ 0.86
TRAV27A0A087WT01 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV27A0A087WT01 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms