Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 RN7SL769P-201ENST00000469386 295 ntBASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 FGFR3P5-201ENST00000564496 886 ntBASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A3BPQ9Y5P4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 CICP4-201ENST00000447359 2812 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 ST20-AS1-201ENST00000560255 4223 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 PDIA3P2-201ENST00000428073 158 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC073150.1-201ENST00000450406 1084 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC020922.3-201ENST00000595064 547 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AF254983.2-201ENST00000612331 135 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AL591471.1-201ENST00000621855 229 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 AC090386.2-201ENST00000623010 1039 ntBASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A3BPQ9Y5P4 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL4A3BPQ9Y5P4 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.01■□□□□ 0.15
COL4A3BPQ9Y5P4 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms