Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HMGN1P4-201ENST00000419500 290 ntBASIC22.7■■□□□ 1.22
IFT140Q96RY7 AL137077.1-201ENST00000442115 528 ntBASIC22.7■■□□□ 1.22
IFT140Q96RY7 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 MIR4526-201ENST00000583168 87 ntBASIC22.7■■□□□ 1.22
IFT140Q96RY7 AL158032.2-201ENST00000616818 195 ntBASIC22.7■■□□□ 1.22
IFT140Q96RY7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC22.7■■□□□ 1.22
IFT140Q96RY7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
IFT140Q96RY7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 RPL13AP5-201ENST00000439189 612 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC105424.1-201ENST00000514583 209 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC025219.1-201ENST00000559299 526 ntTSL 4 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC239600.1-201ENST00000603201 462 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC136475.9-201ENST00000605240 497 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 AC116036.2-201ENST00000607592 462 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 BX640514.1-201ENST00000583223 1918 ntBASIC22.69■■□□□ 1.22
IFT140Q96RY7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC22.69■■□□□ 1.22
IFT140Q96RY7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
IFT140Q96RY7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 ATF4P4-201ENST00000393544 1930 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 RPS6-201ENST00000315377 863 ntTSL 3 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 SNORA30.1-201ENST00000363193 129 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AC008267.3-201ENST00000448776 712 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 LINC00554-201ENST00000564841 3011 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 RCC2P1-201ENST00000452257 1476 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AC011239.2-201ENST00000624820 1489 ntBASIC22.68■■□□□ 1.22
IFT140Q96RY7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
IFT140Q96RY7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 GOLGA2P10-201ENST00000550961 817 ntBASIC22.67■■□□□ 1.22
IFT140Q96RY7 RAB42P1-201ENST00000555078 316 ntBASIC22.67■■□□□ 1.22
IFT140Q96RY7 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 AC006273.1-201ENST00000606966 861 ntBASIC22.67■■□□□ 1.22
IFT140Q96RY7 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC22.67■■□□□ 1.22
IFT140Q96RY7 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 AC112702.1-201ENST00000623712 366 ntBASIC22.67■■□□□ 1.22
IFT140Q96RY7 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC22.67■■□□□ 1.22
IFT140Q96RY7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
IFT140Q96RY7 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms