Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.16■□□□□ 0.18
TPM4P67936 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.16■□□□□ 0.18
TPM4P67936 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.16■□□□□ 0.18
TPM4P67936 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 AC104506.1-201ENST00000609247 429 ntBASIC16.16■□□□□ 0.18
TPM4P67936 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 AC138466.3-201ENST00000619983 221 ntBASIC16.16■□□□□ 0.18
TPM4P67936 AC005252.2-201ENST00000624630 1141 ntBASIC16.16■□□□□ 0.18
TPM4P67936 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.16■□□□□ 0.18
TPM4P67936 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC16.16■□□□□ 0.18
TPM4P67936 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 C2-206ENST00000442278 2434 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TPM4P67936 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM4P67936 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 TSN-212ENST00000536142 3328 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM4P67936 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 AC055876.3-201ENST00000431496 288 ntBASIC16.15■□□□□ 0.18
TPM4P67936 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 AC068587.3-201ENST00000526613 355 ntBASIC16.15■□□□□ 0.18
TPM4P67936 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.15■□□□□ 0.18
TPM4P67936 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 AC138649.4-201ENST00000612222 287 ntBASIC16.15■□□□□ 0.18
TPM4P67936 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.15■□□□□ 0.18
TPM4P67936 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TPM4P67936 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TPM4P67936 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TPM4P67936 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TPM4P67936 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 SLC7A15P-201ENST00000424028 1363 ntBASIC16.14■□□□□ 0.17
TPM4P67936 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.14■□□□□ 0.17
TPM4P67936 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TPM4P67936 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.14■□□□□ 0.17
TPM4P67936 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.14■□□□□ 0.17
TPM4P67936 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 STK3-218ENST00000617590 2485 ntTSL 5 BASIC16.14■□□□□ 0.17
TPM4P67936 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms