Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXA1P49639 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXA1P49639 BTBD7P1-201ENST00000447253 1453 ntBASIC12.02□□□□□ -0.49
HOXA1P49639 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 AC022497.1-201ENST00000624916 3691 ntBASIC12.01□□□□□ -0.49
HOXA1P49639 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
HOXA1P49639 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 PLA2G15-201ENST00000219345 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXA1P49639 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 AL139400.1-201ENST00000366220 510 ntBASIC12.01□□□□□ -0.49
HOXA1P49639 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXA1P49639 DNAJB3-202ENST00000449667 1266 ntBASIC12.01□□□□□ -0.49
HOXA1P49639 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXA1P49639 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
HOXA1P49639 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.01□□□□□ -0.49
HOXA1P49639 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 AL391845.2-201ENST00000443930 1954 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 KRT8P14-201ENST00000414254 1442 ntBASIC12.01□□□□□ -0.49
HOXA1P49639 DRD5P1-201ENST00000456605 1438 ntBASIC12.01□□□□□ -0.49
HOXA1P49639 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXA1P49639 PAM-203ENST00000346918 3302 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXA1P49639 OSTM1-AS1-202ENST00000441184 3334 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXA1P49639 SHROOM2P1-201ENST00000434773 2384 ntBASIC12□□□□□ -0.49
HOXA1P49639 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12□□□□□ -0.49
HOXA1P49639 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 CAPN13-201ENST00000295055 2683 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms