Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.85□□□□□ -0.51
CDX1P47902 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 GNRHR2-203ENST00000581100 1187 ntBASIC11.85□□□□□ -0.51
CDX1P47902 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 KRT8P14-201ENST00000414254 1442 ntBASIC11.85□□□□□ -0.51
CDX1P47902 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 GOLGA2P5-201ENST00000266746 2395 ntBASIC11.84□□□□□ -0.51
CDX1P47902 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 WASH3P-207ENST00000560956 1394 ntBASIC11.84□□□□□ -0.51
CDX1P47902 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 ANKRD19P-201ENST00000338192 862 ntBASIC11.84□□□□□ -0.51
CDX1P47902 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CDX1P47902 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.84□□□□□ -0.51
CDX1P47902 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
CDX1P47902 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC11.84□□□□□ -0.51
CDX1P47902 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC11.84□□□□□ -0.51
CDX1P47902 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.84□□□□□ -0.51
CDX1P47902 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC11.84□□□□□ -0.51
CDX1P47902 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 KRT90P-201ENST00000549264 1064 ntBASIC11.84□□□□□ -0.51
CDX1P47902 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC11.84□□□□□ -0.51
CDX1P47902 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CDX1P47902 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CDX1P47902 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC11.84□□□□□ -0.51
CDX1P47902 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CDX1P47902 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CDX1P47902 AL138709.1-201ENST00000614840 1693 ntBASIC11.84□□□□□ -0.51
CDX1P47902 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CDX1P47902 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CDX1P47902 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CDX1P47902 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
CDX1P47902 AL022323.5-201ENST00000624101 2059 ntBASIC11.83□□□□□ -0.51
CDX1P47902 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms