Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SOX3P41225 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.58□□□□□ -0.24
SOX3P41225 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX3P41225 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 AC103810.3-201ENST00000583567 96 ntBASIC13.58□□□□□ -0.24
SOX3P41225 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX3P41225 AC022748.3-201ENST00000621828 275 ntBASIC13.58□□□□□ -0.24
SOX3P41225 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SOX3P41225 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX3P41225 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SOX3P41225 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX3P41225 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.58□□□□□ -0.24
SOX3P41225 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 FAM58BP-201ENST00000439056 645 ntBASIC13.57□□□□□ -0.24
SOX3P41225 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 AL035414.1-201ENST00000451327 857 ntBASIC13.57□□□□□ -0.24
SOX3P41225 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.57□□□□□ -0.24
SOX3P41225 AC020914.3-201ENST00000594712 304 ntBASIC13.57□□□□□ -0.24
SOX3P41225 BNIP3P13-201ENST00000599968 566 ntBASIC13.57□□□□□ -0.24
SOX3P41225 AC244452.3-201ENST00000636814 210 ntBASIC13.57□□□□□ -0.24
SOX3P41225 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
SOX3P41225 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.57□□□□□ -0.24
SOX3P41225 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 AC012617.1-204ENST00000586340 2305 ntBASIC13.57□□□□□ -0.24
SOX3P41225 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SOX3P41225 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.57□□□□□ -0.24
SOX3P41225 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 AC004899.1-201ENST00000424687 1714 ntBASIC13.56□□□□□ -0.24
SOX3P41225 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms