Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CASP2-203ENST00000392925 616 ntTSL 3 BASIC16.58■□□□□ 0.24
COL4A5P29400 TPT1P9-201ENST00000413759 514 ntBASIC16.58■□□□□ 0.24
COL4A5P29400 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC16.58■□□□□ 0.24
COL4A5P29400 AL356000.1-201ENST00000441073 1238 ntBASIC16.58■□□□□ 0.24
COL4A5P29400 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC16.58■□□□□ 0.24
COL4A5P29400 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
COL4A5P29400 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.58■□□□□ 0.24
COL4A5P29400 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC16.58■□□□□ 0.24
COL4A5P29400 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
COL4A5P29400 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.58■□□□□ 0.24
COL4A5P29400 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A5P29400 AC113367.3-201ENST00000508316 1912 ntBASIC16.58■□□□□ 0.24
COL4A5P29400 DBET-201ENST00000630918 3363 ntBASIC16.58■□□□□ 0.24
COL4A5P29400 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 FMO6P-201ENST00000236166 1620 ntBASIC16.57■□□□□ 0.24
COL4A5P29400 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL4A5P29400 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A5P29400 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC16.57■□□□□ 0.24
COL4A5P29400 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC16.57■□□□□ 0.24
COL4A5P29400 HMGA1P2-201ENST00000430198 324 ntBASIC16.57■□□□□ 0.24
COL4A5P29400 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC16.57■□□□□ 0.24
COL4A5P29400 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 AC087072.1-201ENST00000603727 421 ntBASIC16.57■□□□□ 0.24
COL4A5P29400 AC139100.2-201ENST00000616901 662 ntBASIC16.57■□□□□ 0.24
COL4A5P29400 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC16.57■□□□□ 0.24
COL4A5P29400 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.57■□□□□ 0.24
COL4A5P29400 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
COL4A5P29400 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A5P29400 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A5P29400 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL4A5P29400 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A5P29400 OR7E12P-201ENST00000344740 973 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 RBP4-203ENST00000371469 814 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL4A5P29400 UGT1A12P-201ENST00000447084 853 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC16.56■□□□□ 0.24
COL4A5P29400 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 AC114812.4-201ENST00000506676 757 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 RNA5SP288-201ENST00000516075 93 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 CDC37P2-201ENST00000562287 1029 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC16.56■□□□□ 0.24
COL4A5P29400 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A5P29400 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A5P29400 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL4A5P29400 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A5P29400 AC126177.1-201ENST00000547829 2218 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL4A5P29400 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms