Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC005740.2-201ENST00000511085 419 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC116345.2-201ENST00000512837 523 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MIR3147-201ENST00000577811 66 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 DIO1-215ENST00000610607 796 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CALM1-201ENST00000356978 4242 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 STK33-217ENST00000534493 1895 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZIC3-201ENST00000287538 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 BCAS3-222ENST00000589222 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SPATA2-201ENST00000289431 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TSPAN9-206ENST00000537971 4284 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC015818.9-201ENST00000591705 4582 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SEC23B-201ENST00000262544 3176 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ABL2-202ENST00000367623 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 USP33-204ENST00000370794 4327 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MIR6842-201ENST00000612539 65 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 RUBCNL-208ENST00000429979 3979 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ACE-203ENST00000413513 2237 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 USP30-201ENST00000257548 3742 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MYO1C-201ENST00000359786 5145 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 RN7SL8P-201ENST00000461771 266 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC138466.3-201ENST00000619983 221 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 POLA2-201ENST00000265465 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CHPF2-201ENST00000035307 3978 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms