Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LAP3P2-201ENST00000454686 1454 ntBASIC13.22□□□□□ -0.29
MSX1P28360 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 FAM90A7P-201ENST00000382628 1395 ntBASIC13.21□□□□□ -0.29
MSX1P28360 FAM90A23P-201ENST00000400136 1395 ntBASIC13.21□□□□□ -0.29
MSX1P28360 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.21□□□□□ -0.29
MSX1P28360 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
MSX1P28360 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.21□□□□□ -0.29
MSX1P28360 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
MSX1P28360 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC13.21□□□□□ -0.29
MSX1P28360 AC007274.2-201ENST00000421675 662 ntBASIC13.21□□□□□ -0.29
MSX1P28360 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.21□□□□□ -0.29
MSX1P28360 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 XBP1P1-201ENST00000436573 652 ntBASIC13.21□□□□□ -0.29
MSX1P28360 AC253536.4-201ENST00000440539 267 ntBASIC13.21□□□□□ -0.29
MSX1P28360 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.21□□□□□ -0.29
MSX1P28360 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC13.21□□□□□ -0.29
MSX1P28360 NUP210P1-202ENST00000504322 710 ntBASIC13.21□□□□□ -0.29
MSX1P28360 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 SCARNA21-201ENST00000517026 139 ntBASIC13.21□□□□□ -0.29
MSX1P28360 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC13.21□□□□□ -0.29
MSX1P28360 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 AC003686.1-201ENST00000550956 1034 ntBASIC13.21□□□□□ -0.29
MSX1P28360 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC13.21□□□□□ -0.29
MSX1P28360 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.21□□□□□ -0.29
MSX1P28360 AL161670.2-201ENST00000557650 1227 ntBASIC13.21□□□□□ -0.29
MSX1P28360 AC140658.4-201ENST00000561990 352 ntBASIC13.21□□□□□ -0.29
MSX1P28360 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.21□□□□□ -0.29
MSX1P28360 RN7SL574P-201ENST00000581512 297 ntBASIC13.21□□□□□ -0.29
MSX1P28360 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.21□□□□□ -0.29
MSX1P28360 AC079336.7-201ENST00000623428 1078 ntBASIC13.21□□□□□ -0.29
MSX1P28360 TCAM1P-207ENST00000485295 1537 ntBASIC13.21□□□□□ -0.29
MSX1P28360 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 AC152010.1-201ENST00000415779 2006 ntBASIC13.21□□□□□ -0.29
MSX1P28360 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
MSX1P28360 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MSX1P28360 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.21□□□□□ -0.29
MSX1P28360 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MSX1P28360 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
MSX1P28360 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MSX1P28360 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MSX1P28360 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
MSX1P28360 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
MSX1P28360 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
MSX1P28360 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
MSX1P28360 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.2□□□□□ -0.3
MSX1P28360 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
MSX1P28360 CYP4F23P-201ENST00000593402 1579 ntBASIC13.2□□□□□ -0.3
MSX1P28360 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.2□□□□□ -0.3
MSX1P28360 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
MSX1P28360 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.2□□□□□ -0.3
MSX1P28360 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MSX1P28360 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
MSX1P28360 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.2□□□□□ -0.3
MSX1P28360 AL355994.1-201ENST00000424379 260 ntBASIC13.2□□□□□ -0.3
MSX1P28360 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.2□□□□□ -0.3
MSX1P28360 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.2□□□□□ -0.3
MSX1P28360 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.2□□□□□ -0.3
MSX1P28360 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.2□□□□□ -0.3
MSX1P28360 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.2□□□□□ -0.3
MSX1P28360 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.2□□□□□ -0.3
MSX1P28360 PGAM1P5-201ENST00000548011 764 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms