Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 KRT8P38-201ENST00000441370 1430 ntBASIC17.34■□□□□ 0.37
COL5A3P25940 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC17.34■□□□□ 0.37
COL5A3P25940 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
COL5A3P25940 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.34■□□□□ 0.37
COL5A3P25940 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC17.34■□□□□ 0.37
COL5A3P25940 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC17.34■□□□□ 0.37
COL5A3P25940 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC17.33■□□□□ 0.37
COL5A3P25940 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 RBMXP1-201ENST00000408004 1191 ntBASIC17.33■□□□□ 0.37
COL5A3P25940 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 MTHFD2P7-201ENST00000483867 983 ntBASIC17.33■□□□□ 0.37
COL5A3P25940 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC17.33■□□□□ 0.37
COL5A3P25940 IGHVII-74-1-201ENST00000517572 241 ntBASIC17.33■□□□□ 0.37
COL5A3P25940 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC17.33■□□□□ 0.37
COL5A3P25940 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL5A3P25940 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC17.33■□□□□ 0.37
COL5A3P25940 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
COL5A3P25940 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
COL5A3P25940 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 AC012358.2-201ENST00000430010 1434 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 AC090643.2-201ENST00000623442 2029 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL5A3P25940 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 CFL1P6-201ENST00000400899 494 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
COL5A3P25940 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 AC023051.2-201ENST00000541141 460 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC17.33■□□□□ 0.36
COL5A3P25940 SNX20-205ENST00000610485 557 ntTSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC17.33■□□□□ 0.36
COL5A3P25940 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL5A3P25940 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 CROT-203ENST00000419147 2959 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A3P25940 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
COL5A3P25940 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL5A3P25940 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.32■□□□□ 0.36
COL5A3P25940 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A3P25940 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC17.32■□□□□ 0.36
COL5A3P25940 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC17.32■□□□□ 0.36
COL5A3P25940 AC104212.2-201ENST00000478813 628 ntBASIC17.32■□□□□ 0.36
COL5A3P25940 AK2-208ENST00000487289 920 ntTSL 2 BASIC17.32■□□□□ 0.36
COL5A3P25940 AC114812.4-201ENST00000506676 757 ntBASIC17.32■□□□□ 0.36
COL5A3P25940 OR52V1P-201ENST00000515557 898 ntBASIC17.32■□□□□ 0.36
COL5A3P25940 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.32■□□□□ 0.36
COL5A3P25940 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
COL5A3P25940 AP001462.1-201ENST00000594089 452 ntBASIC17.32■□□□□ 0.36
COL5A3P25940 AP000553.2-201ENST00000609038 441 ntBASIC17.32■□□□□ 0.36
COL5A3P25940 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
COL5A3P25940 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL5A3P25940 AC061965.1-201ENST00000560524 1465 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL5A3P25940 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 AC040160.2-201ENST00000623816 1675 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A3P25940 OR7E12P-201ENST00000344740 973 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 MIR339-201ENST00000362153 94 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 OLA1P2-201ENST00000395519 1264 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms