Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
TRIM39Q9HCM9 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 AL133338.1-201ENST00000565695 1517 ntBASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 OR2R1P-201ENST00000441404 914 ntBASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 ACTG1P17-201ENST00000558391 1119 ntBASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TRIM39Q9HCM9 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 CYP46A4P-201ENST00000414953 267 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 SPTLC1P5-201ENST00000450718 252 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AL157813.1-201ENST00000612996 587 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms