Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
SOX2P48431 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.73□□□□□ -0.37
SOX2P48431 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 MESTP3-201ENST00000503460 968 ntBASIC12.73□□□□□ -0.37
SOX2P48431 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 AP001063.1-201ENST00000568332 529 ntBASIC12.73□□□□□ -0.37
SOX2P48431 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 AC138466.3-201ENST00000619983 221 ntBASIC12.73□□□□□ -0.37
SOX2P48431 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.73□□□□□ -0.37
SOX2P48431 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 AL591122.2-201ENST00000624125 1853 ntBASIC12.73□□□□□ -0.37
SOX2P48431 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.73□□□□□ -0.37
SOX2P48431 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
SOX2P48431 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
SOX2P48431 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 AL928654.5-201ENST00000624831 2501 ntBASIC12.72□□□□□ -0.37
SOX2P48431 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 NCLP1-201ENST00000445357 1963 ntBASIC12.72□□□□□ -0.37
SOX2P48431 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 AC064801.2-201ENST00000625052 1303 ntBASIC12.72□□□□□ -0.37
SOX2P48431 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 ACKR1-201ENST00000368121 1240 ntBASIC12.72□□□□□ -0.37
SOX2P48431 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 PUDPP3-201ENST00000445368 636 ntBASIC12.72□□□□□ -0.37
SOX2P48431 AC093433.1-201ENST00000458048 571 ntBASIC12.72□□□□□ -0.37
SOX2P48431 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.72□□□□□ -0.37
SOX2P48431 AL391280.1-201ENST00000506969 1062 ntBASIC12.72□□□□□ -0.37
SOX2P48431 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.72□□□□□ -0.37
SOX2P48431 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.72□□□□□ -0.37
SOX2P48431 BX088702.1-201ENST00000610784 235 ntBASIC12.72□□□□□ -0.37
SOX2P48431 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 AC009093.2-202ENST00000620513 2079 ntBASIC12.72□□□□□ -0.37
SOX2P48431 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
SOX2P48431 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.72□□□□□ -0.37
SOX2P48431 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SOX2P48431 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms