Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
CD40P25942 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.38□□□□□ -0.43
CD40P25942 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 FGFR3P1-201ENST00000449999 601 ntBASIC12.38□□□□□ -0.43
CD40P25942 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC12.38□□□□□ -0.43
CD40P25942 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC12.38□□□□□ -0.43
CD40P25942 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.38□□□□□ -0.43
CD40P25942 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.38□□□□□ -0.43
CD40P25942 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CD40P25942 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
CD40P25942 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.38□□□□□ -0.43
CD40P25942 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC12.38□□□□□ -0.43
CD40P25942 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.38□□□□□ -0.43
CD40P25942 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD40P25942 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 AC006480.2-201ENST00000609770 1337 ntBASIC12.37□□□□□ -0.43
CD40P25942 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 AC015802.1-201ENST00000588104 1449 ntBASIC12.37□□□□□ -0.43
CD40P25942 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 LINC02228-204ENST00000642115 2962 ntBASIC12.37□□□□□ -0.43
CD40P25942 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CD40P25942 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 AC073869.2-201ENST00000417338 1026 ntBASIC12.37□□□□□ -0.43
CD40P25942 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.37□□□□□ -0.43
CD40P25942 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 NOC2LP1-201ENST00000450578 752 ntBASIC12.37□□□□□ -0.43
CD40P25942 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 ALG1L13P-202ENST00000519320 584 ntBASIC12.37□□□□□ -0.43
CD40P25942 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.37□□□□□ -0.43
CD40P25942 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CD40P25942 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CD40P25942 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 AC106881.1-201ENST00000605849 3329 ntBASIC12.37□□□□□ -0.43
CD40P25942 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD40P25942 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CD40P25942 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.37□□□□□ -0.43
CD40P25942 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CD40P25942 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CD40P25942 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CD40P25942 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CD40P25942 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms