Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HMGA1P17096 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HMGA1P17096 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HMGA1P17096 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 AC005912.2-201ENST00000619492 2400 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.72□□□□□ -0.05
HMGA1P17096 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGA1P17096 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGA1P17096 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGA1P17096 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGA1P17096 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HMGA1P17096 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 OR52M2P-201ENST00000414298 959 ntBASIC14.71□□□□□ -0.05
HMGA1P17096 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.71□□□□□ -0.05
HMGA1P17096 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 RPL13AP19-201ENST00000434320 584 ntBASIC14.71□□□□□ -0.05
HMGA1P17096 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC14.71□□□□□ -0.05
HMGA1P17096 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGA1P17096 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGA1P17096 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HMGA1P17096 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 AL139158.3-201ENST00000641212 1562 ntBASIC14.71□□□□□ -0.05
HMGA1P17096 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HMGA1P17096 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGA1P17096 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGA1P17096 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGA1P17096 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGA1P17096 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGA1P17096 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.71□□□□□ -0.06
HMGA1P17096 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGA1P17096 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGA1P17096 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGA1P17096 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.7□□□□□ -0.06
HMGA1P17096 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 AC004554.1-201ENST00000422830 1468 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
HMGA1P17096 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 RPL3P2-204ENST00000413027 1203 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 AL355334.1-201ENST00000417713 215 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HMGA1P17096 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.7□□□□□ -0.06
HMGA1P17096 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 AL359091.4-201ENST00000610052 409 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
HMGA1P17096 AC138466.5-201ENST00000624002 808 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGA1P17096 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms