Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.95■□□□□ 0.3
HMGB1P09429 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGB1P09429 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGB1P09429 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGB1P09429 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGB1P09429 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGB1P09429 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB1P09429 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
HMGB1P09429 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB1P09429 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 ST20-AS1-201ENST00000560255 4223 ntBASIC16.94■□□□□ 0.3
HMGB1P09429 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB1P09429 DPM3-202ENST00000368399 517 ntBASIC16.94■□□□□ 0.3
HMGB1P09429 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGB1P09429 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.94■□□□□ 0.3
HMGB1P09429 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB1P09429 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB1P09429 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB1P09429 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGB1P09429 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB1P09429 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGB1P09429 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGB1P09429 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGB1P09429 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.93■□□□□ 0.3
HMGB1P09429 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HMGB1P09429 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGB1P09429 AC104073.2-201ENST00000453737 312 ntBASIC16.93■□□□□ 0.3
HMGB1P09429 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 SERPINA13P-202ENST00000478994 924 ntBASIC16.93■□□□□ 0.3
HMGB1P09429 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 AC009779.1-201ENST00000551138 283 ntBASIC16.93■□□□□ 0.3
HMGB1P09429 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGB1P09429 AC091271.1-201ENST00000611877 1162 ntBASIC16.93■□□□□ 0.3
HMGB1P09429 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGB1P09429 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
HMGB1P09429 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGB1P09429 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
HMGB1P09429 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGB1P09429 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
HMGB1P09429 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HMGB1P09429 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms