Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 ENPP7P5-201ENST00000541031 1031 ntBASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 AC015936.2-201ENST00000593177 259 ntBASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 WFDC1-204ENST00000613603 549 ntBASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 FP325330.2-201ENST00000624219 5630 ntBASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
DEPDC4Q8N2C3 AC020658.7-201ENST00000624274 2442 ntBASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 CDY3P-201ENST00000454543 1618 ntBASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 AC132938.2-201ENST00000579188 680 ntBASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 AL591163.1-201ENST00000641757 987 ntBASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
DEPDC4Q8N2C3 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LINC02139-201ENST00000612023 2005 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 KRT43P-201ENST00000434019 910 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 RN7SL837P-201ENST00000463010 287 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms