Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 PEG13-201ENST00000631594 5667 ntBASIC12.28□□□□□ -0.44
USF1P22415 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.28□□□□□ -0.44
USF1P22415 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.28□□□□□ -0.44
USF1P22415 CICP12-201ENST00000455801 843 ntBASIC12.28□□□□□ -0.44
USF1P22415 RN7SL258P-201ENST00000478664 300 ntBASIC12.28□□□□□ -0.44
USF1P22415 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 AC008723.1-201ENST00000506922 207 ntBASIC12.28□□□□□ -0.44
USF1P22415 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.28□□□□□ -0.44
USF1P22415 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 LINC00552-201ENST00000625151 2579 ntBASIC12.28□□□□□ -0.44
USF1P22415 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 FAM90A2P-201ENST00000511144 1395 ntBASIC12.28□□□□□ -0.44
USF1P22415 FAM90A25P-201ENST00000528404 1395 ntBASIC12.28□□□□□ -0.44
USF1P22415 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.28□□□□□ -0.44
USF1P22415 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
USF1P22415 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
USF1P22415 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.27□□□□□ -0.44
USF1P22415 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USF1P22415 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
USF1P22415 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
USF1P22415 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
USF1P22415 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
USF1P22415 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
USF1P22415 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
USF1P22415 AL627231.1-201ENST00000394467 1125 ntBASIC12.27□□□□□ -0.45
USF1P22415 AC098935.1-201ENST00000446057 611 ntBASIC12.27□□□□□ -0.45
USF1P22415 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC12.27□□□□□ -0.45
USF1P22415 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.27□□□□□ -0.45
USF1P22415 MBP-227ENST00000526111 581 ntTSL 4 BASIC12.27□□□□□ -0.45
USF1P22415 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
USF1P22415 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.27□□□□□ -0.45
USF1P22415 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
USF1P22415 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.27□□□□□ -0.45
USF1P22415 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
USF1P22415 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms