Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 VDAC1P1-201ENST00000439229 848 ntBASIC15.14■□□□□ 0.01
APOEP02649 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.14■□□□□ 0.01
APOEP02649 AC104073.2-201ENST00000453737 312 ntBASIC15.14■□□□□ 0.01
APOEP02649 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.14■□□□□ 0.01
APOEP02649 SCARNA20.5-201ENST00000516991 142 ntBASIC15.14■□□□□ 0.01
APOEP02649 SCARNA21-201ENST00000517026 139 ntBASIC15.14■□□□□ 0.01
APOEP02649 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
APOEP02649 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.14■□□□□ 0.01
APOEP02649 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
APOEP02649 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.14■□□□□ 0.01
APOEP02649 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 AC215219.1-201ENST00000400706 1817 ntBASIC15.14■□□□□ 0.01
APOEP02649 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
APOEP02649 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.14■□□□□ 0.01
APOEP02649 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
APOEP02649 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
APOEP02649 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.13■□□□□ 0.01
APOEP02649 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
APOEP02649 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.13■□□□□ 0.01
APOEP02649 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 HLA-J-204ENST00000495278 958 ntBASIC15.13■□□□□ 0.01
APOEP02649 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.13■□□□□ 0.01
APOEP02649 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 AC005586.2-201ENST00000563946 837 ntBASIC15.13■□□□□ 0.01
APOEP02649 MIR3615-201ENST00000581999 87 ntBASIC15.13■□□□□ 0.01
APOEP02649 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.13■□□□□ 0.01
APOEP02649 AL359881.3-201ENST00000602640 1721 ntBASIC15.13■□□□□ 0.01
APOEP02649 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.13■□□□□ 0.01
APOEP02649 MIR6787-201ENST00000616675 61 ntBASIC15.13■□□□□ 0.01
APOEP02649 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 AC011474.4-201ENST00000623523 2076 ntBASIC15.13■□□□□ 0.01
APOEP02649 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.13■□□□□ 0.01
APOEP02649 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.13■□□□□ 0.01
APOEP02649 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
APOEP02649 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 AC010327.5-201ENST00000586923 3061 ntBASIC15.13■□□□□ 0.01
APOEP02649 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
APOEP02649 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
APOEP02649 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms