Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RHOXF1P1-202ENST00000635473 501 ntBASIC14.11□□□□□ -0.15
SIX3O95343 AL358472.5-202ENST00000641448 1267 ntBASIC14.11□□□□□ -0.15
SIX3O95343 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SIX3O95343 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.11□□□□□ -0.15
SIX3O95343 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SIX3O95343 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.11□□□□□ -0.15
SIX3O95343 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.11□□□□□ -0.15
SIX3O95343 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
SIX3O95343 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.11□□□□□ -0.15
SIX3O95343 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SIX3O95343 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SIX3O95343 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.11□□□□□ -0.15
SIX3O95343 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 PDIA3P1-201ENST00000471856 1510 ntBASIC14.1□□□□□ -0.15
SIX3O95343 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 MEX3B-202ENST00000558133 4333 ntBASIC14.1□□□□□ -0.15
SIX3O95343 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.1□□□□□ -0.15
SIX3O95343 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.1□□□□□ -0.15
SIX3O95343 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 NME2P1-201ENST00000426182 414 ntBASIC14.1□□□□□ -0.15
SIX3O95343 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.1□□□□□ -0.15
SIX3O95343 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.1□□□□□ -0.15
SIX3O95343 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SIX3O95343 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SIX3O95343 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SIX3O95343 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SIX3O95343 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SIX3O95343 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.09□□□□□ -0.15
SIX3O95343 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
SIX3O95343 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
SIX3O95343 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SIX3O95343 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
SIX3O95343 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
SIX3O95343 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.09□□□□□ -0.15
SIX3O95343 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.09□□□□□ -0.15
SIX3O95343 AC026954.1-201ENST00000429771 1293 ntBASIC14.09□□□□□ -0.15
SIX3O95343 AL157407.1-201ENST00000435784 904 ntBASIC14.09□□□□□ -0.15
SIX3O95343 HOMER2P2-201ENST00000451621 847 ntBASIC14.09□□□□□ -0.15
SIX3O95343 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 AC100850.1-201ENST00000506768 649 ntBASIC14.09□□□□□ -0.15
SIX3O95343 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 AP000812.2-201ENST00000538934 718 ntBASIC14.09□□□□□ -0.15
SIX3O95343 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.09□□□□□ -0.15
SIX3O95343 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SIX3O95343 DUX4L46-201ENST00000566845 751 ntBASIC14.09□□□□□ -0.15
SIX3O95343 MIR4783-201ENST00000580343 82 ntBASIC14.09□□□□□ -0.15
SIX3O95343 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.09□□□□□ -0.15
SIX3O95343 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms