Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 HARS-202ENST00000415192 1401 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAM90A12P-201ENST00000519497 2375 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAM90A24P-201ENST00000520792 2369 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ANKRD19P-201ENST00000338192 862 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAM21FP-201ENST00000426241 1131 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 AC026954.1-201ENST00000429771 1293 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PUDP-206ENST00000540122 825 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ZACNP1-201ENST00000612259 710 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 AC009093.2-202ENST00000620513 2079 ntBASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AL136309.1-201ENST00000403917 691 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 HLA-V-201ENST00000429037 534 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AL355994.2-201ENST00000447882 704 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AL035414.1-201ENST00000451327 857 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 HOMER2P2-201ENST00000451621 847 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 PTENP1-202ENST00000532280 3996 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA2Q9Y261 AGAP10P-201ENST00000454844 2418 ntBASIC11.69□□□□□ -0.54
FOXA2Q9Y261 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms