Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 HYMAI-201ENST00000635591 3347 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 HNRNPA1P9-201ENST00000450624 950 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC8.5□□□□□ -1.05
HSPG2P98160 snoZ6.3-201ENST00000583496 76 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 CD37-203ENST00000426897 1204 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 OARD1-214ENST00000486443 764 ntTSL 3 BASIC8.5□□□□□ -1.05
HSPG2P98160 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC8.5□□□□□ -1.05
HSPG2P98160 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC8.5□□□□□ -1.05
HSPG2P98160 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC8.5□□□□□ -1.05
HSPG2P98160 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC8.49□□□□□ -1.05
HSPG2P98160 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 PTAFR-201ENST00000305392 1539 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 AC008741.2-201ENST00000612792 3115 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 USP8-219ENST00000625664 1568 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 NME1-209ENST00000511355 1645 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 TFAM-201ENST00000373895 973 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC8.49□□□□□ -1.05
HSPG2P98160 PGAM1P10-201ENST00000402426 761 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 MRPS16P3-201ENST00000415961 374 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 AC004112.1-201ENST00000431064 561 ntTSL 3 BASIC8.49□□□□□ -1.05
HSPG2P98160 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC8.49□□□□□ -1.05
HSPG2P98160 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC8.49□□□□□ -1.05
HSPG2P98160 AC068134.4-201ENST00000613365 122 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 AL118508.1-201ENST00000613502 2345 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 TPM3P7-201ENST00000338274 732 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 KLK8-203ENST00000347619 555 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 SRSF9P1-201ENST00000399149 530 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 AC105424.1-201ENST00000514583 209 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 CYP4F10P-201ENST00000589560 752 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC8.49□□□□□ -1.05
HSPG2P98160 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
HSPG2P98160 TUBB8P9-201ENST00000422534 1276 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 TUBB8P10-201ENST00000430210 1279 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 AC139143.1-201ENST00000441772 1207 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 AC015818.1-201ENST00000451011 244 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC8.49□□□□□ -1.05
HSPG2P98160 HDAC2-AS2-216ENST00000522844 808 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 RPL30-213ENST00000523172 274 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC8.49□□□□□ -1.05
HSPG2P98160 AL109954.3-201ENST00000615088 558 ntBASIC8.49□□□□□ -1.05
HSPG2P98160 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HSPG2P98160 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC8.49□□□□□ -1.05
HSPG2P98160 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC8.49□□□□□ -1.05
HSPG2P98160 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms