Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A21P-201ENST00000510875 1396 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A15P-201ENST00000514465 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A6P-201ENST00000515148 1394 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A16P-201ENST00000526662 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A9P-201ENST00000527940 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A5P-201ENST00000528738 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A14P-201ENST00000530386 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 FAM90A13P-201ENST00000534703 1395 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 AL591122.2-201ENST00000624125 1853 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
ABCA4P78363 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC12.4□□□□□ -0.42
ABCA4P78363 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 LINC00634-202ENST00000505157 222 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 HMGB1P24-201ENST00000611897 328 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 AC087392.5-201ENST00000612517 489 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
ABCA4P78363 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC12.4□□□□□ -0.42
ABCA4P78363 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 AC025183.3-201ENST00000623526 1482 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 AC004837.1-201ENST00000446267 564 ntBASIC12.4□□□□□ -0.42
ABCA4P78363 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC12.4□□□□□ -0.42
ABCA4P78363 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.4□□□□□ -0.42
ABCA4P78363 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
ABCA4P78363 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
ABCA4P78363 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
ABCA4P78363 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
ABCA4P78363 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.4□□□□□ -0.43
ABCA4P78363 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
ABCA4P78363 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.39□□□□□ -0.43
ABCA4P78363 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.39□□□□□ -0.43
ABCA4P78363 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
ABCA4P78363 BCAS2P2-201ENST00000425064 674 ntBASIC12.39□□□□□ -0.43
ABCA4P78363 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.39□□□□□ -0.43
ABCA4P78363 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC12.39□□□□□ -0.43
ABCA4P78363 AC009145.4-201ENST00000625119 1294 ntBASIC12.39□□□□□ -0.43
ABCA4P78363 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 AGAP7P-201ENST00000582299 2062 ntBASIC12.39□□□□□ -0.43
ABCA4P78363 AGAP14-201ENST00000624701 2060 ntBASIC12.39□□□□□ -0.43
ABCA4P78363 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.39□□□□□ -0.43
ABCA4P78363 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
ABCA4P78363 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms