Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.69□□□□□ -0.22
LIM2P55344 TCAM1P-207ENST00000485295 1537 ntBASIC13.69□□□□□ -0.22
LIM2P55344 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.69□□□□□ -0.22
LIM2P55344 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LIM2P55344 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 LAP3P2-201ENST00000454686 1454 ntBASIC13.68□□□□□ -0.22
LIM2P55344 AHCYP4-201ENST00000419201 1315 ntBASIC13.68□□□□□ -0.22
LIM2P55344 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 AC018629.1-201ENST00000623381 1736 ntBASIC13.68□□□□□ -0.22
LIM2P55344 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
LIM2P55344 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.68□□□□□ -0.22
LIM2P55344 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.68□□□□□ -0.22
LIM2P55344 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 NKAIN1P1-201ENST00000435754 582 ntBASIC13.68□□□□□ -0.22
LIM2P55344 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.68□□□□□ -0.22
LIM2P55344 PGAM1P5-201ENST00000548011 764 ntBASIC13.68□□□□□ -0.22
LIM2P55344 AC013355.1-201ENST00000562625 723 ntBASIC13.68□□□□□ -0.22
LIM2P55344 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.68□□□□□ -0.22
LIM2P55344 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.68□□□□□ -0.22
LIM2P55344 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 AL022313.4-201ENST00000562756 2046 ntBASIC13.68□□□□□ -0.22
LIM2P55344 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
LIM2P55344 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.67□□□□□ -0.22
LIM2P55344 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
LIM2P55344 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.67□□□□□ -0.22
LIM2P55344 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 AL365209.1-201ENST00000624418 6473 ntBASIC13.67□□□□□ -0.22
LIM2P55344 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.67□□□□□ -0.22
LIM2P55344 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
LIM2P55344 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.67□□□□□ -0.22
LIM2P55344 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.67□□□□□ -0.22
LIM2P55344 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 XBP1P1-201ENST00000436573 652 ntBASIC13.67□□□□□ -0.22
LIM2P55344 OR2R1P-201ENST00000441404 914 ntBASIC13.67□□□□□ -0.22
LIM2P55344 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
LIM2P55344 TMEM198B-204ENST00000484016 896 ntBASIC13.67□□□□□ -0.22
LIM2P55344 AC022217.1-201ENST00000521069 738 ntBASIC13.67□□□□□ -0.22
LIM2P55344 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms