Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC005912.2-201ENST00000619492 2400 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 CICP14-201ENST00000629111 2732 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC098935.1-201ENST00000446057 611 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC104784.1-201ENST00000473096 294 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 RN7SL258P-201ENST00000478664 300 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC131206.1-201ENST00000538078 1211 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AP003419.4-201ENST00000616071 517 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC007718.1-201ENST00000621078 280 ntBASIC15.72■□□□□ 0.11
VPS52Q8N1B4 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.72■□□□□ 0.11
VPS52Q8N1B4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 OR2K2-202ENST00000374428 1038 ntBASIC15.71■□□□□ 0.11
VPS52Q8N1B4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AC008723.1-201ENST00000506922 207 ntBASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AC026803.1-201ENST00000569130 274 ntBASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AL109837.1-201ENST00000603272 613 ntBASIC15.71■□□□□ 0.11
VPS52Q8N1B4 AL805961.1-201ENST00000642026 753 ntBASIC15.71■□□□□ 0.11
VPS52Q8N1B4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms