Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC078814.4-201ENST00000546650 327 ntBASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 AL359219.1-201ENST00000556311 934 ntBASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 AL353622.2-201ENST00000605846 425 ntBASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC88AQ3V6T2 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.21■□□□□ 0.34
CCDC88AQ3V6T2 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 ZNF877P-201ENST00000437614 612 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 AC084262.1-201ENST00000567818 751 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 AL009176.1-201ENST00000607876 650 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 OR7E115P-201ENST00000382617 1024 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 PGAM1P11-201ENST00000416729 680 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 LINP1-201ENST00000417112 917 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 TBC1D3P6-201ENST00000505954 962 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 MIR6893-201ENST00000613458 69 ntBASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC88AQ3V6T2 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 ABCD1P4-201ENST00000399687 604 ntBASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 VDAC1P11-201ENST00000458323 852 ntBASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 URB1-AS1-201ENST00000534991 831 ntBASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 TUBB8P4-201ENST00000511806 1324 ntBASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 KRT8P18-201ENST00000413425 1445 ntBASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC88AQ3V6T2 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC88AQ3V6T2 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms