Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.27■□□□□ 0.04
BRCC3P46736 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BRCC3P46736 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.27■□□□□ 0.04
BRCC3P46736 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.27■□□□□ 0.04
BRCC3P46736 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.27■□□□□ 0.04
BRCC3P46736 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
BRCC3P46736 RN7SL736P-201ENST00000613111 269 ntBASIC15.27■□□□□ 0.04
BRCC3P46736 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.27■□□□□ 0.03
BRCC3P46736 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.27■□□□□ 0.03
BRCC3P46736 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.27■□□□□ 0.03
BRCC3P46736 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
BRCC3P46736 AL591122.2-201ENST00000624125 1853 ntBASIC15.27■□□□□ 0.03
BRCC3P46736 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 LINC00552-201ENST00000625151 2579 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
BRCC3P46736 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 RPL17P11-201ENST00000417593 544 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.26■□□□□ 0.03
BRCC3P46736 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC15.26■□□□□ 0.03
BRCC3P46736 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 LDHBP1-201ENST00000455730 1119 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 AC104784.1-201ENST00000473096 294 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 RPL18AP8-201ENST00000486071 528 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 RN7SL81P-201ENST00000493781 261 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 AL031713.1-201ENST00000564813 661 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 AL021707.6-201ENST00000609212 491 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 AC025262.2-201ENST00000623975 1056 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BRCC3P46736 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
BRCC3P46736 AL022313.4-201ENST00000562756 2046 ntBASIC15.26■□□□□ 0.03
BRCC3P46736 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.26■□□□□ 0.03
BRCC3P46736 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC15.25■□□□□ 0.03
BRCC3P46736 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
BRCC3P46736 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.25■□□□□ 0.03
BRCC3P46736 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.25■□□□□ 0.03
BRCC3P46736 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC15.25■□□□□ 0.03
BRCC3P46736 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC15.25■□□□□ 0.03
BRCC3P46736 AC130709.1-201ENST00000484779 1212 ntBASIC15.25■□□□□ 0.03
BRCC3P46736 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.25■□□□□ 0.03
BRCC3P46736 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.25■□□□□ 0.03
BRCC3P46736 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.25■□□□□ 0.03
BRCC3P46736 AC009145.4-201ENST00000625119 1294 ntBASIC15.25■□□□□ 0.03
BRCC3P46736 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.25■□□□□ 0.03
BRCC3P46736 AP001184.1-201ENST00000637936 376 ntBASIC15.25■□□□□ 0.03
BRCC3P46736 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC15.25■□□□□ 0.03
BRCC3P46736 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
BRCC3P46736 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms