Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL6A3P12111 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL6A3P12111 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 FBXO39-201ENST00000321535 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A3P12111 LINC00877-207ENST00000488545 1561 ntTSL 3 BASIC14.39□□□□□ -0.11
COL6A3P12111 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 MIR345-201ENST00000362114 98 ntBASIC14.38□□□□□ -0.11
COL6A3P12111 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 AL512444.1-201ENST00000419644 480 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 AL358115.1-202ENST00000455257 675 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A3P12111 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A3P12111 RAB42P1-201ENST00000555078 316 ntBASIC14.38□□□□□ -0.11
COL6A3P12111 AC011773.4-202ENST00000566000 1264 ntBASIC14.38□□□□□ -0.11
COL6A3P12111 AC007378.1-201ENST00000609765 478 ntBASIC14.38□□□□□ -0.11
COL6A3P12111 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A3P12111 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A3P12111 AC016735.1-201ENST00000457457 237 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 CBX3P4-202ENST00000540428 423 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.38□□□□□ -0.11
COL6A3P12111 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 AL139158.3-201ENST00000641212 1562 ntBASIC14.38□□□□□ -0.11
COL6A3P12111 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 APOC2-201ENST00000252490 727 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 CMC2-202ENST00000486645 766 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A3P12111 OPRM1-211ENST00000518759 1060 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A3P12111 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A3P12111 AC015802.4-203ENST00000592622 570 ntTSL 4 BASIC14.38□□□□□ -0.11
COL6A3P12111 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
COL6A3P12111 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A3P12111 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.37□□□□□ -0.11
COL6A3P12111 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL6A3P12111 AC104212.2-201ENST00000478813 628 ntBASIC14.37□□□□□ -0.11
COL6A3P12111 AC044839.1-201ENST00000532307 541 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 AC005336.1-201ENST00000585431 1243 ntBASIC14.37□□□□□ -0.11
COL6A3P12111 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL6A3P12111 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 AC087481.3-201ENST00000602886 1894 ntBASIC14.37□□□□□ -0.11
COL6A3P12111 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A3P12111 STK16-202ENST00000409260 1493 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.37□□□□□ -0.11
COL6A3P12111 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL6A3P12111 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC14.36□□□□□ -0.11
COL6A3P12111 YBX1P3-201ENST00000468366 909 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 NDUFB2P1-201ENST00000506966 295 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 IGHV3-60-201ENST00000521678 354 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 AC089987.3-201ENST00000551847 588 ntTSL 4 BASIC14.36□□□□□ -0.11
COL6A3P12111 AL121790.2-201ENST00000553425 379 ntTSL 4 BASIC14.36□□□□□ -0.11
COL6A3P12111 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A3P12111 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A3P12111 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 AC011477.7-201ENST00000617163 1440 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 LAMTOR2-203ENST00000368305 655 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 TCEAL9-202ENST00000372661 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 AKR1C5P-201ENST00000427165 609 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 AL391822.1-201ENST00000452580 562 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms