Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.5
NPHP1O15259 TMBIM7P-203ENST00000641617 1718 ntBASIC18.2■□□□□ 0.5
NPHP1O15259 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
NPHP1O15259 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 LYPLA2P1-203ENST00000447689 696 ntBASIC18.2■□□□□ 0.5
NPHP1O15259 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
NPHP1O15259 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.2■□□□□ 0.5
NPHP1O15259 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 TEKT4P2-202ENST00000559466 1312 ntBASIC18.2■□□□□ 0.5
NPHP1O15259 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC18.2■□□□□ 0.5
NPHP1O15259 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
NPHP1O15259 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.2■□□□□ 0.5
NPHP1O15259 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPHP1O15259 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.19■□□□□ 0.5
NPHP1O15259 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 BAK1P1-201ENST00000317045 636 ntBASIC18.19■□□□□ 0.5
NPHP1O15259 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 RN7SKP109-201ENST00000410592 316 ntBASIC18.19■□□□□ 0.5
NPHP1O15259 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.19■□□□□ 0.5
NPHP1O15259 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.19■□□□□ 0.5
NPHP1O15259 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.19■□□□□ 0.5
NPHP1O15259 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 ALG1L13P-202ENST00000519320 584 ntBASIC18.19■□□□□ 0.5
NPHP1O15259 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.19■□□□□ 0.5
NPHP1O15259 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 KRT8P1-201ENST00000557533 1207 ntBASIC18.19■□□□□ 0.5
NPHP1O15259 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NPHP1O15259 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
NPHP1O15259 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NPHP1O15259 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
NPHP1O15259 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPHP1O15259 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.19■□□□□ 0.5
NPHP1O15259 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 SNX18-202ENST00000343017 3140 ntBASIC18.18■□□□□ 0.5
NPHP1O15259 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.18■□□□□ 0.5
NPHP1O15259 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NPHP1O15259 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
NPHP1O15259 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.18■□□□□ 0.5
NPHP1O15259 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC18.18■□□□□ 0.5
NPHP1O15259 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.18■□□□□ 0.5
NPHP1O15259 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC18.18■□□□□ 0.5
NPHP1O15259 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPHP1O15259 TMCO5B-205ENST00000530020 894 ntBASIC18.18■□□□□ 0.5
NPHP1O15259 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms