Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SCN11AQ9UI33 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.46
SCN11AQ9UI33 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SCN11AQ9UI33 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 AC046158.3-201ENST00000624947 2558 ntBASIC17.95■□□□□ 0.46
SCN11AQ9UI33 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 ACTBP7-201ENST00000418351 1124 ntBASIC17.95■□□□□ 0.46
SCN11AQ9UI33 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 AC007279.1-201ENST00000448547 837 ntBASIC17.95■□□□□ 0.46
SCN11AQ9UI33 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SCN11AQ9UI33 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 RPL10-203ENST00000406022 748 ntTSL 3 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 HLA-DPA2-205ENST00000433582 733 ntBASIC17.94■□□□□ 0.46
SCN11AQ9UI33 KNOP1P1-201ENST00000542108 989 ntBASIC17.94■□□□□ 0.46
SCN11AQ9UI33 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 RNF146-211ENST00000609447 607 ntTSL 4 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 PGK1P2-201ENST00000431702 1214 ntBASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 AC010531.8-201ENST00000623341 685 ntBASIC17.94■□□□□ 0.46
SCN11AQ9UI33 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SCN11AQ9UI33 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms