Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC073352.2-201ENST00000609385 439 ntBASIC15.75■□□□□ 0.11
VPS52Q8N1B4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS52Q8N1B4 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 AC144522.1-201ENST00000625111 1658 ntBASIC15.74■□□□□ 0.11
VPS52Q8N1B4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 GCOM2-201ENST00000509133 1104 ntBASIC15.74■□□□□ 0.11
VPS52Q8N1B4 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 AL157813.1-201ENST00000612996 587 ntBASIC15.74■□□□□ 0.11
VPS52Q8N1B4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS52Q8N1B4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AL627231.1-201ENST00000394467 1125 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AL645933.1-201ENST00000440087 609 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC006122.1-201ENST00000493323 440 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 COX6A1P2-201ENST00000620597 330 ntBASIC15.73■□□□□ 0.11
VPS52Q8N1B4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS52Q8N1B4 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms