Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
IRX4P78413 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 MIR33B-201ENST00000385104 96 ntBASIC15.17■□□□□ 0.02
IRX4P78413 AC104457.1-201ENST00000401024 814 ntBASIC15.17■□□□□ 0.02
IRX4P78413 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 AC079178.1-201ENST00000420915 656 ntBASIC15.17■□□□□ 0.02
IRX4P78413 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.17■□□□□ 0.02
IRX4P78413 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.17■□□□□ 0.02
IRX4P78413 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.17■□□□□ 0.02
IRX4P78413 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.17■□□□□ 0.02
IRX4P78413 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
IRX4P78413 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 AC136759.1-202ENST00000530858 2194 ntBASIC15.17■□□□□ 0.02
IRX4P78413 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
IRX4P78413 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.16■□□□□ 0.02
IRX4P78413 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.16■□□□□ 0.02
IRX4P78413 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.16■□□□□ 0.02
IRX4P78413 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
IRX4P78413 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.16■□□□□ 0.02
IRX4P78413 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 SERPINA13P-202ENST00000478994 924 ntBASIC15.16■□□□□ 0.02
IRX4P78413 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.16■□□□□ 0.02
IRX4P78413 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.16■□□□□ 0.02
IRX4P78413 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.16■□□□□ 0.02
IRX4P78413 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
IRX4P78413 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.16■□□□□ 0.02
IRX4P78413 MIR7845-201ENST00000618396 99 ntBASIC15.16■□□□□ 0.02
IRX4P78413 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
IRX4P78413 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
IRX4P78413 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
IRX4P78413 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms