Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 AC139712.1-201ENST00000378256 1875 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 AL118506.1-201ENST00000601296 3082 ntBASIC11.9□□□□□ -0.5
NKX2-1P43699 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.9□□□□□ -0.5
NKX2-1P43699 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 AL391647.1-201ENST00000395664 511 ntBASIC11.9□□□□□ -0.5
NKX2-1P43699 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 AC009474.1-201ENST00000455096 1565 ntBASIC11.9□□□□□ -0.5
NKX2-1P43699 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.9□□□□□ -0.5
NKX2-1P43699 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 AC036164.1-201ENST00000570544 333 ntBASIC11.9□□□□□ -0.5
NKX2-1P43699 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC11.9□□□□□ -0.5
NKX2-1P43699 AL049840.4-201ENST00000602422 811 ntBASIC11.9□□□□□ -0.5
NKX2-1P43699 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.9□□□□□ -0.5
NKX2-1P43699 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.9□□□□□ -0.5
NKX2-1P43699 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC11.9□□□□□ -0.5
NKX2-1P43699 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NKX2-1P43699 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.51
NKX2-1P43699 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 USP47-202ENST00000339865 7775 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.89□□□□□ -0.51
NKX2-1P43699 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.89□□□□□ -0.51
NKX2-1P43699 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.89□□□□□ -0.51
NKX2-1P43699 FAM86LP-201ENST00000478302 853 ntBASIC11.89□□□□□ -0.51
NKX2-1P43699 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 RPL13AP25-201ENST00000484130 612 ntBASIC11.89□□□□□ -0.51
NKX2-1P43699 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
NKX2-1P43699 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC11.89□□□□□ -0.51
NKX2-1P43699 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC11.89□□□□□ -0.51
NKX2-1P43699 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.89□□□□□ -0.51
NKX2-1P43699 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.89□□□□□ -0.51
NKX2-1P43699 AC073592.8-201ENST00000624126 511 ntBASIC11.89□□□□□ -0.51
NKX2-1P43699 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms