Protein–RNA interactions for Protein: P43005

SLC1A1, Excitatory amino acid transporter 3, humanhuman

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A1P43005 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 E2F3P2-201ENST00000447755 1422 ntBASIC15.14■□□□□ 0.01
SLC1A1P43005 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC15.14■□□□□ 0.01
SLC1A1P43005 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SLC1A1P43005 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SLC1A1P43005 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SLC1A1P43005 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.14■□□□□ 0.01
SLC1A1P43005 AL008718.2-201ENST00000609206 1313 ntBASIC15.14■□□□□ 0.01
SLC1A1P43005 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.14■□□□□ 0.01
SLC1A1P43005 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SLC1A1P43005 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 CICP17-201ENST00000418553 2377 ntBASIC15.13■□□□□ 0.01
SLC1A1P43005 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SLC1A1P43005 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.13■□□□□ 0.01
SLC1A1P43005 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.13■□□□□ 0.01
SLC1A1P43005 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.13■□□□□ 0.01
SLC1A1P43005 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.13■□□□□ 0.01
SLC1A1P43005 AP005018.1-201ENST00000525475 301 ntBASIC15.13■□□□□ 0.01
SLC1A1P43005 AC079316.1-201ENST00000548397 411 ntBASIC15.13■□□□□ 0.01
SLC1A1P43005 RBM8B-201ENST00000555532 525 ntBASIC15.13■□□□□ 0.01
SLC1A1P43005 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.13■□□□□ 0.01
SLC1A1P43005 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SLC1A1P43005 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SLC1A1P43005 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SLC1A1P43005 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.13■□□□□ 0.01
SLC1A1P43005 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SLC1A1P43005 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SLC1A1P43005 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 COX5BP8-201ENST00000416911 349 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 HMGN1P19-201ENST00000436976 333 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 FAM58BP-201ENST00000439056 645 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 RPL7P3-201ENST00000441388 714 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC1A1P43005 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 AC023310.1-201ENST00000554836 735 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC1A1P43005 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.12■□□□□ 0.01
SLC1A1P43005 AC009955.4-201ENST00000597192 544 ntBASIC15.12■□□□□ 0.01
SLC1A1P43005 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms