Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGCLP35914 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.35□□□□□ -0.11
HMGCLP35914 TUBBP5-203ENST00000508529 1334 ntBASIC14.35□□□□□ -0.11
HMGCLP35914 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGCLP35914 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGCLP35914 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGCLP35914 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGCLP35914 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGCLP35914 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGCLP35914 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGCLP35914 AKR7A2P1-201ENST00000460134 915 ntBASIC14.34□□□□□ -0.11
HMGCLP35914 SCARNA20.5-201ENST00000516991 142 ntBASIC14.34□□□□□ -0.11
HMGCLP35914 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGCLP35914 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 MST1P2-201ENST00000457982 2291 ntBASIC14.34□□□□□ -0.11
HMGCLP35914 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGCLP35914 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGCLP35914 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGCLP35914 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
HMGCLP35914 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
HMGCLP35914 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HMGCLP35914 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HMGCLP35914 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.33□□□□□ -0.11
HMGCLP35914 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.33□□□□□ -0.11
HMGCLP35914 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.11
HMGCLP35914 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGCLP35914 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGCLP35914 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HMGCLP35914 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 AC103592.1-201ENST00000394513 664 ntBASIC14.33□□□□□ -0.12
HMGCLP35914 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.33□□□□□ -0.12
HMGCLP35914 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.33□□□□□ -0.12
HMGCLP35914 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGCLP35914 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HMGCLP35914 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HMGCLP35914 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGCLP35914 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGCLP35914 NAP1L6-202ENST00000641404 1222 ntBASIC14.33□□□□□ -0.12
HMGCLP35914 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 AC011474.4-201ENST00000623523 2076 ntBASIC14.33□□□□□ -0.12
HMGCLP35914 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGCLP35914 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms