Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC022497.1-201ENST00000624916 3691 ntBASIC13.85□□□□□ -0.19
MSX2P35548 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
MSX2P35548 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
MSX2P35548 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
MSX2P35548 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC13.85□□□□□ -0.19
MSX2P35548 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
MSX2P35548 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
MSX2P35548 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13.84□□□□□ -0.19
MSX2P35548 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 AC092580.3-201ENST00000430932 139 ntBASIC13.84□□□□□ -0.19
MSX2P35548 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX2P35548 AC069120.2-201ENST00000524091 540 ntBASIC13.84□□□□□ -0.19
MSX2P35548 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX2P35548 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.84□□□□□ -0.19
MSX2P35548 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
MSX2P35548 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.84□□□□□ -0.19
MSX2P35548 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.84□□□□□ -0.19
MSX2P35548 AC036164.1-201ENST00000570544 333 ntBASIC13.84□□□□□ -0.19
MSX2P35548 SRD5A3P1-201ENST00000603021 949 ntBASIC13.84□□□□□ -0.19
MSX2P35548 AC027612.4-201ENST00000605371 583 ntBASIC13.84□□□□□ -0.19
MSX2P35548 AP001002.3-201ENST00000623482 206 ntBASIC13.84□□□□□ -0.19
MSX2P35548 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
MSX2P35548 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.84□□□□□ -0.19
MSX2P35548 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13.84□□□□□ -0.19
MSX2P35548 MIR193BHG-211ENST00000641433 5365 ntBASIC13.84□□□□□ -0.19
MSX2P35548 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
MSX2P35548 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.83□□□□□ -0.19
MSX2P35548 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC13.83□□□□□ -0.19
MSX2P35548 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
MSX2P35548 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
MSX2P35548 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
MSX2P35548 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
MSX2P35548 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.83□□□□□ -0.2
MSX2P35548 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX2P35548 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX2P35548 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms