Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 AC005840.4-201ENST00000541242 2494 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HMGB1P09429 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 FAM90A7P-201ENST00000382628 1395 ntBASIC17.03■□□□□ 0.32
HMGB1P09429 FAM90A23P-201ENST00000400136 1395 ntBASIC17.03■□□□□ 0.32
HMGB1P09429 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HMGB1P09429 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB1P09429 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HMGB1P09429 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.03■□□□□ 0.32
HMGB1P09429 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 HLA-J-204ENST00000495278 958 ntBASIC17.03■□□□□ 0.32
HMGB1P09429 SCARNA21-201ENST00000517026 139 ntBASIC17.03■□□□□ 0.32
HMGB1P09429 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGB1P09429 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 AC007952.5-201ENST00000572818 1486 ntBASIC17.03■□□□□ 0.32
HMGB1P09429 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB1P09429 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB1P09429 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
HMGB1P09429 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 NIN-202ENST00000324330 4364 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGB1P09429 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGB1P09429 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HMGB1P09429 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
HMGB1P09429 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HMGB1P09429 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 AC004899.1-201ENST00000424687 1714 ntBASIC17.02■□□□□ 0.32
HMGB1P09429 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGB1P09429 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGB1P09429 AL591846.1-201ENST00000451736 433 ntBASIC17.02■□□□□ 0.32
HMGB1P09429 RNMTL1P1-201ENST00000454103 560 ntBASIC17.02■□□□□ 0.32
HMGB1P09429 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms